3300003672: Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, USA - CR2A Metatranscriptome (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003672
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053052 | Gp0053805 | Ga0001194
• Sample Name: Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, USA - CR2A Metatranscriptome (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4726411
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 351MFTsu5.1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Estuarine Microbial Mat Communities From Elkhorn Slough, Moss Landing, Ca, That Are H2-evolving And Photosynthetic
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Mat Communities From Elkhorn Slough, Moss Landing, Ca, That Are H2-evolving And Photosynthetic

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): estuarine biome → estuary → estuarine water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Elkhorn Slough, Moss Landing, CA
• Coordinates
  • Lat. (^o): 33.8
  • Long. (^o): -121.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F001633	Metagenome / Metatranscriptome	660	Y
F006338	Metagenome / Metatranscriptome	375	Y
F007777	Metagenome / Metatranscriptome	345	Y
F012439	Metagenome / Metatranscriptome	280	Y
F014631	Metagenome / Metatranscriptome	261	Y
F016001	Metagenome / Metatranscriptome	250	Y
F023129	Metagenome / Metatranscriptome	211	Y
F027071	Metagenome / Metatranscriptome	195	Y
F030355	Metagenome / Metatranscriptome	185	Y
F034588	Metagenome / Metatranscriptome	174	N
F035643	Metagenome / Metatranscriptome	171	Y
F070802	Metagenome / Metatranscriptome	122	Y
F081239	Metagenome / Metatranscriptome	114	Y
F100491	Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0001194_100103	Not Available	572
Ga0001194_100273	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	587
Ga0001194_100342	Not Available	513
Ga0001194_100473	Not Available	663
Ga0001194_100578	Not Available	543
Ga0001194_100617	Not Available	570
Ga0001194_100711	Not Available	593
Ga0001194_101001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 351MFTsu5.1	585
Ga0001194_101450	Not Available	695
Ga0001194_101572	Not Available	576
Ga0001194_101592	Not Available	592
Ga0001194_101612	Not Available	711
Ga0001194_101976	Not Available	1054
Ga0001194_101992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	764
Ga0001194_103167	Not Available	600
Ga0001194_103273	Not Available	636
Ga0001194_104196	Not Available	563

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0001194_100103	Ga0001194_1001032	F006338	VVLENGILSGPATRPKTPLAVENSVGKLAAAEMWRQMPAREREPGELPSPVWS
Ga0001194_100273	Ga0001194_1002732	F000344	MRPKHLHAAESGVGKHNARESESVQACAAGKERVTNAHPH
Ga0001194_100342	Ga0001194_1003422	F000344	MRPKHPHAAESGVGKHTARESERAQACAAGKERVANAHPH
Ga0001194_100473	Ga0001194_1004731	F081239	LLSRIAGPGAEAEFTGSSDTFARVSNAKKELGNEERLETVPSWIK*
Ga0001194_100578	Ga0001194_1005781	F035643	GMHRTEHCNRWRRAHHLSAPQRVFSPPAGSMLSGTPRAAIDQGRSLVTAFRSPVTAAPSRSPHPKVNVPGLLLRNLPPGRTARSDFRSATASGSPRTAAASSRQSRCSASTRFERLLPRSPLPFGPVTSLRIKAFNHIGCHSARLPASPDFLSLPEACSIPRPASDHRSRFATFPKACCS
Ga0001194_100617	Ga0001194_1006171	F034588	SFGGAGCESSRLPLRFAPPVSPTISIRVAPDAHPPVPADFRSESPRSSVPSGCPHRISGLLRRLALSFVARPFPKSPWFLLAQRRRFRPPRVASKPSSSADPYLLPQVAPASASTAGSMITPWLNRTLHPRLAPWMNLRYQSGTSIPYLTSSALLISIHCPQSADHEL*
Ga0001194_100711	Ga0001194_1007111	F014631	VPSDPMDCSLSDRHARPELGIRIGSDVGPLLPAAGLIQLRIVALVLVRSPFR*
Ga0001194_101001	Ga0001194_1010011	F030355	VPSDLISSLALRGHAPHRASRSIALDVSPVSSPTGVFATRRINAFRHAACCSRSGPVARNGLSLACNGCSFSEHPSQGQRSGPATSLPSARLHCPFGFPLRHRFPVGPGRRRHRRVNPVAALARASIGCSCGLHSPSGLLHPSGSKRSTASAAIRPAFRIRPISSRSPKPVLFLGSASDHRSWSATFPEARCSSN
Ga0001194_101450	Ga0001194_1014501	F012439	RASRLLRSPAACAPPFVLRSNLATRSDSRRAPPLGSSSLIATSAGGVHHSAGNPDPAVTFRPRRFSRPRRFPPPPAFAGLFHPAATSRVCPSGVCPSPRSRTGFPRPIHALLALNADTCDQRPRPRLQGFAPRRECGVGRDGLGLDRSAPLVGFSSSGFSXRATWECLHIPSALDLHSARNP*
Ga0001194_101572	Ga0001194_1015722	F006338	MLGGPATRPKTPLAVENSVGKLAAPETGRQMPARERESGELP
Ga0001194_101592	Ga0001194_1015921	F007777	LRGSVARPVLGVVERKAASRSGLLPVMEADAHLRTDPQLGKTSGGEQRAHVSPDSDATFRPRMPVGEQTARGSLG
Ga0001194_101612	Ga0001194_1016121	F027071	NRVFSLSTILTSSYPLIKRARKKRCSNLISFYQHSRSIFAALPCGGAVSSNAIDNNIELKLTTTPLRKQLPLFVQRRHRPSMPLAPALANLRSKHKRQHGNAPSGQRINSLRNHFTGKRFASSLPLHQLSLTLRIKITGHFNKAKLNSTDTSLLAKLCISSANALANILAIGNFTLLANHQTAVPEEISFDLLGPFNRRYCYPRSAAISASCPTNTSTLNRRDNSCKYCYLAEVIR
Ga0001194_101976	Ga0001194_1019761	F070802	PALRIIRILPSAISSILYISSSVLAIMKQYSSIVLFMLVAISGHALGAPLDGSNGDCPGGLANGAQIERGRSVFECRNGNVVAKACVADDLKHIDIGSTTDKKAFRLQCTVNSDGSATLEPTACLHQGQEHKVDEQWEDSTNFYTCKKSETELKVITAGCIDQGKRVPLNQQAAHDDFVFVCNGTVNNGARMMPSGCVKDGKQYNVGDSFEAGNLWFNCTRTGSEKVAAKAAGCVTNGKRVNDGDRYSDNEVIQECDINGQPRLIGCAERDDKGEIVERRVGCTWVEGPEPFQYEWTCRQESNSAKKVQVRCNYKVGGGVYNIEPGCYRVIDKSAFGCLNNAGTLKLQSFQ
Ga0001194_101992	Ga0001194_1019922	F001633	HSLFPGGTRLDALAFAGGVLPDATLRGMRMFRSHGGTVLTVAGRDLSSEASAPGSVTPAGGGSPDVVRTRLQTNFSRPYRCHRDGASLWLAVGPVLRV*
Ga0001194_102164	Ga0001194_1021641	F100491	CSPTGMHGPNVASGTGET*ALCFPLKVLANRGSLRRCASALHSDRSPLLDATFRSTAPRTGLATDPRNCVNVPGLHLRNDPQIRSGPFGYVLPHPLCLLWLGGRDLHTNPLPNPT*RLIARLRTSAPLRELSLPRDQSSQPDFELQSLPLQVARSSFAPRSAATVLWIAQRFGSSFQIRYFLPGSLS
Ga0001194_103167	Ga0001194_1031672	F023129	MKSNLRVKRRDPWPRANALPKAAADPELSGQDADQKSQTCLDPVREPVAQPLVQAS*
Ga0001194_103273	Ga0001194_1032731	F016001	VWESAVAATVFSRRFDPIPSWAFLLQVFTLDAVRTLSRPLPLMVLMATLSSHYRHRPTAFRHRAWLASLEVAYLLEVL
Ga0001194_104196	Ga0001194_1041961	F027071	QAIRDLSLSSILISSCPLIKSAWKKISSNLISFYLHTHSKIAALPCGGAVSPNAIDNNIELKLTTTSLRKQLPLFVQRCHPPSASLAPILANLRSKYKRQQSNAQSGQRINPLRNYSAGSCLAPSRPLHQSPSSLRIRITGNINKAKLNNIGTSHLAKNCAGGSITLAGSLAVSNLTLLANHQTAMP