Scaffold L3E_1056861

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold L3E_1056861

Scaffold L3E_1056861

Overview

Basic Information
Taxon OID	3300003666 Open in IMG/M
Scaffold ID	L3E_1056861 Open in IMG/M
Source Dataset Name	Lithgow State Coal Mine Metagenomic Study (LSCM3 Early)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	564
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum borinquense	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location
Location Name	Lithgow
Coordinates	Lat. (^o)	-33.460524	Long. (^o)	150.168149	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103328	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
L3E_10568611	F103328	GGAGG	MFRKEDGAIDMVSLILTVVIAAVTMMVGLVVVANMESSMPDISGSALSTSLTNVMENTGTAFNFLALGLFVLAAVFIIGIVAGVLGGGQ*

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