Scaffold LSCMMerge_1016592

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LSCMMerge_1016592

Scaffold LSCMMerge_1016592

Overview

Basic Information
Taxon OID	3300003660 Open in IMG/M
Scaffold ID	LSCMMerge_1016592 Open in IMG/M
Source Dataset Name	Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM Merged)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1526
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location
Location Name	Lithgow
Coordinates	Lat. (^o)	-33.460524	Long. (^o)	150.168149	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084407	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
LSCMMerge_10165922	F084407	AGGAGG	MPTSGNVLALLPVLTPYTPTSAQFDLLYPYALDEFEGDDPGCSKTGAERALAYLMAHYLAGGEDQIGFSGEKIDDYSYTVAGPAATSSRWYVLYRQQLDRCRDALAIGPAALAGVQHADVSGLSDLHLDQNPVVRVRRDSDESP*

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