NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LSCMMerge_1000013

Scaffold LSCMMerge_1000013


Overview

Basic Information
Taxon OID3300003660 Open in IMG/M
Scaffold IDLSCMMerge_1000013 Open in IMG/M
Source Dataset NameCoalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM Merged)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)317015
Total Scaffold Genes309 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)255 (82.52%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location
Location NameLithgow
CoordinatesLat. (o)-33.460524Long. (o)150.168149Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017885Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
LSCMMerge_100001332F017885GGAGMVDVEACRIAFQCPQCGRELEQTIGKLKSQARMICPGCSIGINIDATRLSNVVEEIRHAVEKVPPEITIKFYR*

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