Scaffold SLW08_114000

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SLW08_114000

Scaffold SLW08_114000

Overview

Basic Information
Taxon OID	3300003654 Open in IMG/M
Scaffold ID	SLW08_114000 Open in IMG/M
Source Dataset Name	Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.8 micron filter
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	662
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location
Location Name	West Antarctica
Coordinates	Lat. (^o)	-84.24	Long. (^o)	-153.694	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023107	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
SLW08_1140002	F023107	GGGGG	MDTISLTRTVQFVGDYFTLMTTVVLEEKLRLADEEDEDFAVRVASVFMKEYYGFDVEAVSNEIGVVDE*

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