Scaffold SLW02_100629

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SLW02_100629

Scaffold SLW02_100629

Overview

Basic Information
Taxon OID	3300003653 Open in IMG/M
Scaffold ID	SLW02_100629 Open in IMG/M
Source Dataset Name	Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.2 micron filter
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4425
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location
Location Name	West Antarctica
Coordinates	Lat. (^o)	-84.24	Long. (^o)	-153.694	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049580	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
SLW02_1006293	F049580	GGAGG	VSTKRAVDPRDPRGGLRGLDVPVIPGSEPPDPERAAADERRGLFGVKLIVGGLVGSAILFTILGIIAQRLGT*

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