Scaffold NAP1_1001889

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NAP1_1001889

Scaffold NAP1_1001889

Overview

Basic Information
Taxon OID	3300003645 Open in IMG/M
Scaffold ID	NAP1_1001889 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1918
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location Name	Gulf of Naples
Coordinates	Lat. (^o)	40.7245	Long. (^o)	14.3775	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017320	Metagenome / Metatranscriptome	241	N

Sequences

Protein ID	Family	RBS	Sequence
NAP1_10018892	F017320	N/A	MIMILKIVPNPGFCLINIHKKSTDTLIKKVAVPIDKLVVFDIPSARTDHGEFPVVDKIKRPSPNPKIARPKIKKKDVDNFGLKLKELSELQDTIGIFLIFRNIF*

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