NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MetavP1_101533

Scaffold MetavP1_101533


Overview

Basic Information
Taxon OID3300003631 Open in IMG/M
Scaffold IDMetavP1_101533 Open in IMG/M
Source Dataset NameHypersaline viral communities from Bras del Port, Santa Pola, Spain - LoValdivia P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLifesequencing S.L.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2219
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum aethiopicum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain

Source Dataset Sampling Location
Location NameBras del Port, Santa Pola, Spain
CoordinatesLat. (o)38.192206Long. (o)-0.591865Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066493Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
MetavP1_1015335F066493GAGGMSDAEREWDDGLVDVADELVSEYSAAGAIDRLQRRRASTTNDELADRCVAAIAYIRREVQDHES*

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