Scaffold MetavP1_100028

Overview

Basic Information

• Taxon OID: 3300003631
• Scaffold ID: MetavP1_100028
• Source Dataset Name: Hypersaline viral communities from Bras del Port, Santa Pola, Spain - LoValdivia P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Lifesequencing S.L.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23148
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (72.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain

Source Dataset Sampling Location

• Location Name: Bras del Port, Santa Pola, Spain
• Coordinates
  • Lat. (^o): 38.192206
  • Long. (^o): -0.591865

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062489	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
MetavP1_10002828	F062489	GGAGG	MSGPAAIILRERVAEGPTRRIVWHPLTSGGYERSEQLWRLAKEGWHTTGTEIVDALAIDCPRGQR*