Basic Information | |
---|---|
Taxon OID | 3300003620 Open in IMG/M |
Scaffold ID | JGI26273J51734_10035615 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1716 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F035726 | Metagenome / Metatranscriptome | 171 | Y |
F056584 | Metagenome | 137 | Y |
F074735 | Metagenome / Metatranscriptome | 119 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI26273J51734_100356152 | F056584 | AGGAG | MATLTISSDTNPGVVVLKGKMAWIQNRAWAYRNKGFNVLITWEQK* |
JGI26273J51734_100356153 | F074735 | AGGAG | MNEKKLNKKELLEAIESYERMIRNESLMKTFTKHMRGAFVVRLGRLNAELKRRK* |
JGI26273J51734_100356154 | F035726 | N/A | MTLIKKKTEKAKYYSDLTKGEMVKIISEQKGLNLSALDRATKIDIEEIAKALNVTANYKGAK* |
⦗Top⦘ |