Scaffold JGI26273J51734_10029036

Overview

Basic Information

• Taxon OID: 3300003620
• Scaffold ID: JGI26273J51734_10029036
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1987
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046311	Metagenome	151	Y
F056584	Metagenome	137	Y
F074735	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26273J51734_100290361	F046311	N/A	MGSVAIMRTPRQQKNHEAWLRQKQRVINYLNENEMIVFFLLGLCFLVMVGALAVAIA*
JGI26273J51734_100290362	F056584	AGGAG	MATLTVSSETNPGVIVLKGSRAWIEKRAWAYRNKGFNVLITWEQK*
JGI26273J51734_100290363	F074735	GAGG	MNEKKLNRKELLEAIESYERMIRNESLMKTFTKHMRGAFVVRLGRLNAELKRRK*