Scaffold JGI26273J51734_10002881

Overview

Basic Information

• Taxon OID: 3300003620
• Scaffold ID: JGI26273J51734_10002881
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8602
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F032304	Metagenome / Metatranscriptome	180	Y
F044418	Metagenome / Metatranscriptome	154	N
F055643	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26273J51734_1000288121	F014724	AGGAG	MKEELKAIRCAIDGVADEILEDRRHANMGDLVKAMENISSTLCTISYDLKDLVEAKKFQNELTTALR*
JGI26273J51734_1000288122	F044418	N/A	MRIEERMIDYAQKWYKVNDLETEKKNGSDLYLRVNDNVFTEVSHCDIRQKAILWLQSELEGVMYS*
JGI26273J51734_100028815	F055643	N/A	MTAKELIELINSTQDGEIWLYSSKLRDHLATVEQALEEDLIHFIRADVGNSTTEFIRVSI
JGI26273J51734_100028816	F032304	N/A	VFIWCRGYVVSMNHSESGTRKVLKQLRKCAEITEIKQTAKGHMVLADNGAQILVHLSARAFHPLRRWLKANTSLKSLKF*