Scaffold JGI26249J51723_1002196

Overview

Basic Information

• Taxon OID: 3300003585
• Scaffold ID: JGI26249J51723_1002196
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5856
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011736	Metagenome / Metatranscriptome	287	N
F044735	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26249J51723_10021965	F011736	GGA	MENKNIFLMIFFYCTINLSYAKDLDTNSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDFDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
JGI26249J51723_10021969	F044735	N/A	MIKNYLIKSIFIFTALITLFLILDHKVDERIAIMQKINHGKAT