Scaffold JGI26260J51721_1011083

Overview

Basic Information

• Taxon OID: 3300003580
• Scaffold ID: JGI26260J51721_1011083
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2325
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035726	Metagenome / Metatranscriptome	171	Y
F056584	Metagenome	137	Y
F063454	Metagenome / Metatranscriptome	129	Y
F074735	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26260J51721_10110832	F056584	AGGAG	MATLTISSDDNKGVVVLKGARAWIGERAIAYRKKGFNVLIQWEQK*
JGI26260J51721_10110833	F074735	AGGAG	MNEKKLTKQELIEAIKSYERMRNNKAFMKTFTKHMQGAFVVRLGRLNAELKRRK*
JGI26260J51721_10110834	F035726	AGGAG	MSLINKKETKVKYYSDLTKGEMVKVIKEQTSLTLPALERATKIDIESIAKALKVNANYKGA*
JGI26260J51721_10110836	F063454	GAG	MKQLELDLVIQGDSKFDDIPTLEEMIERKRNRPKHLENLSDKHYQLMKQIFKGRF*