Scaffold Ga0007417J51691_1042736

Overview

Basic Information

• Taxon OID: 3300003544
• Scaffold ID: Ga0007417J51691_1042736
• Source Dataset Name: Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_33 (Metagenome Metatranscriptome, Counting Only)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 662
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.972988
  • Long. (^o): -123.116539

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043494	Metagenome / Metatranscriptome	156	Y
F054018	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007417J51691_10427361	F054018	N/A	DNPMRKLGIIGLAIVAATAFGVWSASTVAQSRVGKAHVLAASAPISPHAIMVSLGSSLPSEYWSHPY*
Ga0007417J51691_10427362	F043494	GAGG	MLALGKTVVLASMILGSCLNPSAAQEASSDVAFVETVTGQAVALVSGRPTLLGSSEVITNRTRVDVLANSELRLCHYQTSRFLTVKGPARIIVSVDGINVEAGKAVVS