NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ba1_1002337

Scaffold Ba1_1002337


Overview

Basic Information
Taxon OID3300003535 Open in IMG/M
Scaffold IDBa1_1002337 Open in IMG/M
Source Dataset NamePetroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA- 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24572
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (93.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Unclassified → Unclassified → Unclassified → Petroleum Reservoir → Petroleum Reservoir Microbial Communities From Reconcavo Basin, Brazil, Analyzing Oil Degradation

Source Dataset Sampling Location
Location NameBrazil: State of Bahia
CoordinatesLat. (o)-12.2Long. (o)-38.11Alt. (m)Depth (m)500 to 1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029455Metagenome / Metatranscriptome188Y
F038519Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ba1_10023373F029455AGGMTESKRIVDIDLWEDGTADRLPKITVTGAGLRFEGERAEFDRLCLILGGWLKP*
Ba1_10023378F038519GGAMKFRKSIIMQMHVIAYEPSADWAGPYTNQELLKRTLAIIQQVDRTAEVISKETDPWAEQILAGLLPYKIHVDLVDGMPQLPAAVSITWPPAQLEGIQIGSQEFREYFVWAKSEVAALRKLATLNKTPSAAKPAAATEEA*

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