Scaffold Antarctic1_1265615

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Antarctic1_1265615

Scaffold Antarctic1_1265615

Overview

Basic Information
Taxon OID	3300003517 Open in IMG/M
Scaffold ID	Antarctic1_1265615 Open in IMG/M
Source Dataset Name	Marine microbial communities from Antarctic Ocean - Station_363 -- 3.0 um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	510
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Freshwater → Marine Microbial Communities From Antarctic Lakes And Southern Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-60.00007	Long. (^o)	141.23353	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059448	Metagenome	134	N
F087749	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Antarctic1_12656151	F059448	N/A	IEVIAKGSWLTDLEVAERAKMKLDAALYYLRRLRRLGLVISEWVHGQRVWGVLNCT*
Antarctic1_12656152	F087749	GAG	MENRHEKPRPWTIQCFHGTAYVDYYMHRHDFHDVVLSYEYDRKQWYSRTRTSLVTIEKDTPFNDSKELSKDMTKKLRSNYGEPL*

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