3300003517: Marine microbial communities from Antarctic Ocean - Station_363 -- 3.0 um

Overview

Basic Information

• IMG/M Taxon OID: 3300003517
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0062048 | Gp0107576 | Ga0060305
• Sample Name: Marine microbial communities from Antarctic Ocean - Station_363 -- 3.0 um
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 86297686
• Sequencing Scaffolds: 6
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Antarctic Lakes And Southern Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Freshwater → Marine Microbial Communities From Antarctic Lakes And Southern Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): ocean biome → marine photic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Ocean
• Coordinates
  • Lat. (^o): -60.00007
  • Long. (^o): 141.23353
  • Alt. (m): N/A
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000057	Metagenome / Metatranscriptome	3033	Y
F049950	Metagenome	146	N
F056914	Metagenome	137	Y
F059448	Metagenome	134	N
F067116	Metagenome / Metatranscriptome	126	N
F082063	Metagenome / Metatranscriptome	113	Y
F083254	Metagenome	113	Y
F087749	Metagenome	110	N
F105929	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Antarctic1_1261960	Not Available	501
Antarctic1_1265615	Not Available	510
Antarctic1_1266531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	513
Antarctic1_1267962	Not Available	518
Antarctic1_1270622	Not Available	535
Antarctic1_1272086	Not Available	562

Sequences

Scaffold ID	Protein ID	Family	Sequence
Antarctic1_1261960	Antarctic1_12619602	F049950	MNDKKNIFVYIPIVAVVLGSLYSGITMFNSAMGSIEKTANDIDLIRKDLSYWESEMTRTKEDFNKEMTRIVTEIAEATAYIEASRDSSYKTQDTVRQNSYDIKELTRQLNGGW*
Antarctic1_1265615	Antarctic1_12656151	F059448	IEVIAKGSWLTDLEVAERAKMKLDAALYYLRRLRRLGLVISEWVHGQRVWGVLNCT*
Antarctic1_1265615	Antarctic1_12656152	F087749	MENRHEKPRPWTIQCFHGTAYVDYYMHRHDFHDVVLSYEYDRKQWYSRTRTSLVTIEKDTPFNDSKELSKDMTKKLRSNYGEPL*
Antarctic1_1266358	Antarctic1_12663581	F105929	MTTFTGYIARETEKAYGILINLTDEKLAWIPKKKIESETRAELAAVIVMAGETIQRKVWLTDLEIDTDWFNKVLA*
Antarctic1_1266531	Antarctic1_12665312	F083254	IQTLGPGSKKHFHLVPGSLIEKLAASSLKLEAWRLDLESIAQKFDDVGLTLENLGA*
Antarctic1_1267962	Antarctic1_12679621	F056914	MNLFTQTIANQIPTGLDRYDQIFAAKRLILASDSPILATCRETLEEIEEIIFQRDKKELTNA*
Antarctic1_1270622	Antarctic1_12706222	F000057	MASKFNSEFNYRYQVIGDTPWEKIKTLQGFLEGRIRAAALEEVSVLK
Antarctic1_1272086	Antarctic1_12720861	F067116	MKSLKSIILETTDGDYQIDTHLVKMKTLTSIERKFKDQNIVAIIRIDEDQFMVFVEIE*
Antarctic1_1272250	Antarctic1_12722501	F082063	MPWLLPLTGVRAPMHKRIGRWQPQEPLPLYVPEDCNTLEEAVARVAQDPRITTIVLGKGDHQIVGRYLNITTAMSIVGRPEVPKEKIVVVGGIRFIKGIQGNCHLQHMTLRQTKWTGVGGQSSFTMEDVLVEQCGWHGVVATGTGVVGRCTDVEVRQCGWSGVDAVGGASSH*