Scaffold JGI25930J51415_1001837

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1001837
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4826
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F061860	Metagenome / Metatranscriptome	131	Y
F063708	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_10018372	F001781	AGGA	LKPDDKDKLNKCLEILDTTDLGLSLVWLWTWSTINNIMEDETFKAKVTVDDMWDNLCEAVAAGHGFSLEYGAEQHHDDVLEWMLNREYIVDTMFEEEEEEDE*
JGI25930J51415_10018373	F061860	AGGA	MNKLQLSPRLQKLIDMGESGTDILHGELKNMMYECEQVLIPLLDNSDKLGSDEEYEDTVNRLYNEGYMDALSAVYSLTYELAFAIDERKKSLEA*
JGI25930J51415_10018374	F063708	AGAAGG	MPNKLIEYMKLHLISLEQDLEENPMSLHVVDIEGQIYATRHLLSVAEDMIEA*
JGI25930J51415_10018375	F001460	GGTGG	MLGYTEEDLNRMINAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFMQGLWAEGYFDYA*