Scaffold JGI25930J51415_1000154

Overview

Basic Information

• Taxon OID: 3300003499
• Scaffold ID: JGI25930J51415_1000154
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13883
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029734	Metagenome / Metatranscriptome	187	N
F060854	Metagenome / Metatranscriptome	132	N
F070030	Metagenome / Metatranscriptome	123	Y
F073288	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_100015419	F070030	AGGA	MIIQESVTLVCEYCNAEIERHTNLEAREALAEHQNYVQCIKGY*
JGI25930J51415_10001542	F029734	AGAAGG	MRKVATETLSGVVKNGTIHISKADNKRVFAKVRITTNTAKSSKKIEAILSAMGQYPNFDKVLAAVLKVEPNAYLTLKGGAN*
JGI25930J51415_100015420	F060854	GGA	MSRPRPTEIKLVANLLDPDNTNSESASELAVEIIEALDVSRDKRDSYILVAQLARWAPVQAWGEFSTKLQVEKFMKNLSAVDAEGGRAVIVHLEQPDKLLERIGAK*
JGI25930J51415_100015429	F073288	GAGG	MRLMLVTLVGITLPIAAPAHALSPQLTVEKRLSVIEDKKDRVEFAIMQFTNNKREAQCAVQIAYKESRYNEDSLNKSSGARGVWQLLWGRPGWSLLKQTQEAHEYVLHRYDTWCEALSFHRERNWY*