NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25925J51416_10153716

Scaffold JGI25925J51416_10153716


Overview

Basic Information
Taxon OID3300003497 Open in IMG/M
Scaffold IDJGI25925J51416_10153716 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)522
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013171Metagenome273Y
F059944Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
JGI25925J51416_101537161F059944N/AVQIDAYRVMMTGYYMMVSIWFALSATAGNKKGDFITCTQS
JGI25925J51416_101537162F013171N/AGYAAKGKRASREEMNKVVQLQVVPQTFSVDRTEPLQLSNEDWVKAANVAAPKAPPECCAKGNTLRTGLSKTTQKPYYGYVCVDNIKEHAIWAKQDATGAWFFPKREGE*

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