Scaffold JGI25926J51410_1006116

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1006116
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2506
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F062447	Metagenome / Metatranscriptome	130	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10061161	F104482	N/A	MKKQKNKMTSEEFEKAMKAQGRLVSKVYYRITFKGVGLYILNSFQFKLLPKFFYMNGKYFTEFGFNWLGWIFEFQWNR*
JGI25926J51410_10061163	F032536	N/A	MSQKQTFEELMRSFRFHKNPILNWFLGEVSYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYVLDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKFK*
JGI25926J51410_10061164	F062447	AGGAG	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGAKSFSLQDIKEVLDSVRETLNKL*
JGI25926J51410_10061165	F024040	GAGG	MNIYVTGHNWFAKVDIDTKKIDKSDWYNEACTRAIESVLDQEEKEGVDLKIIDYDDFGLGVILLTWDEKNSKNEDEHRVILTSNVLANAGRWEEYNFVKDYEEKAKEQGL*