Scaffold JGI25926J51410_1002285

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1002285
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3870
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F006385	Metagenome / Metatranscriptome	374	Y
F007263	Metagenome / Metatranscriptome	354	Y
F013527	Metagenome / Metatranscriptome	270	Y
F017133	Metagenome / Metatranscriptome	242	Y
F026557	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_100228511	F006385	GGAG	LILDNGTLIAIVIALAGSLSMMLVFWKQNIAQQKEIRRLQLTLRDERLKK*
JGI25926J51410_100228512	F007263	AGAAGG	MTSVIIDQNEFYLIKDEMLFCCDEQQFKHTCKTHGEAMGCYYCEFDYSQNCEEQH*
JGI25926J51410_100228513	F000447	AGGAG	MGYIEIFRIDNEGAGWVDLEQATPDELFNLEVGLLNEGALFTTKEND*
JGI25926J51410_100228515	F013527	AGAAGG	METFEFNTFIDVEAESYDEAIDVFQFQLKYGINKDNVYVADIKQLTNNNESVEV*
JGI25926J51410_10022853	F017133	GAGG	MSIWTKFATVSDYPKGLMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFEGVNK*
JGI25926J51410_10022858	F026557	AGG	MINSVMSIPCEECHSTGLIFFGDNDNFDVETCECDFGIEQDLNQFNN*