Basic Information | |
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Taxon OID | 3300003490 Open in IMG/M |
Scaffold ID | JGI25926J51410_1001678 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4387 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000545 | Metagenome / Metatranscriptome | 1038 | Y |
F000645 | Metagenome / Metatranscriptome | 962 | Y |
F002241 | Metagenome / Metatranscriptome | 579 | Y |
F013317 | Metagenome / Metatranscriptome | 272 | Y |
F014016 | Metagenome / Metatranscriptome | 266 | N |
F031093 | Metagenome / Metatranscriptome | 183 | N |
F059096 | Metagenome / Metatranscriptome | 134 | N |
Protein ID | Family | RBS | Sequence |
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JGI25926J51410_100167810 | F059096 | GGA | MTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAINNFAGREKLNVELP* |
JGI25926J51410_100167811 | F000645 | GAG | MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVAQITKEFGAEIIDEIPLCSGGDGPMVLKQGTKEGKEYRGWVCPTPKSGHPAKWMRIGADGHWVFQK* |
JGI25926J51410_100167812 | F000545 | N/A | MKQDAHPFICSNCKLVTPHIELHKYDSTDIAEAPEEVWLVECQRCFMQRIIYPADRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLEEISERYWTGNETKERPYNAAL* |
JGI25926J51410_100167814 | F002241 | GGA | MSKPHSIRYIRQLMEWGFDKEFIAKDCGINLESLETRLRRAKERERRNGNQGTESGTSGSQPNS* |
JGI25926J51410_10016784 | F031093 | GAG | MPAPELATLVASVLGSIALLIAGLRYIIKLENIPIVSRLDKMESQLELALAKGVRNGNAKARK* |
JGI25926J51410_10016786 | F013317 | N/A | MIEKKKWDYLADIRAXTGAKTLYINSTPHGVYQFDLGAITEPEWALKRLPITTDFGNKATNERLAGFLDIRLADLLLV* |
JGI25926J51410_10016787 | F014016 | GGA | MVNKVALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVSADVA* |
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