Scaffold JGI25926J51410_1001678

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1001678
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4387
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F013317	Metagenome / Metatranscriptome	272	Y
F014016	Metagenome / Metatranscriptome	266	N
F031093	Metagenome / Metatranscriptome	183	N
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_100167810	F059096	GGA	MTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAINNFAGREKLNVELP*
JGI25926J51410_100167811	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVAQITKEFGAEIIDEIPLCSGGDGPMVLKQGTKEGKEYRGWVCPTPKSGHPAKWMRIGADGHWVFQK*
JGI25926J51410_100167812	F000545	N/A	MKQDAHPFICSNCKLVTPHIELHKYDSTDIAEAPEEVWLVECQRCFMQRIIYPADRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLEEISERYWTGNETKERPYNAAL*
JGI25926J51410_100167814	F002241	GGA	MSKPHSIRYIRQLMEWGFDKEFIAKDCGINLESLETRLRRAKERERRNGNQGTESGTSGSQPNS*
JGI25926J51410_10016784	F031093	GAG	MPAPELATLVASVLGSIALLIAGLRYIIKLENIPIVSRLDKMESQLELALAKGVRNGNAKARK*
JGI25926J51410_10016786	F013317	N/A	MIEKKKWDYLADIRAXTGAKTLYINSTPHGVYQFDLGAITEPEWALKRLPITTDFGNKATNERLAGFLDIRLADLLLV*
JGI25926J51410_10016787	F014016	GGA	MVNKVALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVSADVA*