Scaffold JGI25926J51410_1000013

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1000013
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19085
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009887	Metagenome	311	Y
F011143	Metagenome / Metatranscriptome	294	Y
F020143	Metagenome	225	N
F026555	Metagenome	197	N
F026865	Metagenome / Metatranscriptome	196	N
F036148	Metagenome	170	N
F045093	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10000131	F026555	N/A	MSKFDYHKAMREGHGYNLYVADLLQHFGVPKVDVPAFSIATTHDQIRDKTLNEKDVIVDDLVLEIKSSSRSFTNADDFPFNPVMIDTVSGFDNKIIKPFAYVMISQITQGVFVIPTSTKYDWTIRTYWDAERQIEDQF
JGI25926J51410_100001310	F036148	N/A	MATKKPRKAPQRRRRTPRKAEALSKLENHYITLNELFRAAKSAGFSHEVAFWLITEPGASMPDWINPSNQPTEIIPRIDPTEDEDND*
JGI25926J51410_10000132	F009887	GGA	MGDMEMIGADGIRATFTDSGVELDIVPLNQCCEWCNDPRMLNINGVRKCVGCGCVNHIEYKPHE*
JGI25926J51410_100001320	F020143	AGGCGG	MRPLYARLPGRTRSLAAVPSIYVENLDELMATMKKIEPDLHKEFRRELTKAVKPVAKLAQSFVPYSPFPGWRDVEPSYPPAWGWANDQAHRGRTFGESKRSRWKWSQVEVIRGIRVSAAKTKVQRVKGTTFSVTALAVLNKSVPGIIYELAGFGTSKSRSKTRRISRNLNASESFIGKLQGTASSGAYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGEKFRG*
JGI25926J51410_100001321	F026865	N/A	VSVATGISPKDLLEVDPAIYSAIKAILQERYYNNKKATVRRK*
JGI25926J51410_100001322	F011143	AGG	MHKIEIVKKDGKKVTYDLTPSAKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTDLAFGDDYINQYSDIDLVYDSKNG*
JGI25926J51410_100001332	F045093	AGGGGG	MEMPNAKQLKIVASGKPKKKLGRHTTAMVKAITGRNDIDTVKREMLLGLARAWDRIEESGKGGHTIPSISKELREIWDSCALPDEDDLFE*