Scaffold NAP4_1001318

Overview

Basic Information

• Taxon OID: 3300003474
• Scaffold ID: NAP4_1001318
• Source Dataset Name: Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3777
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location

• Location Name: Sarno river estuary, Gulf of Naples
• Coordinates
  • Lat. (^o): 40.72683
  • Long. (^o): 14.46133
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065486	Metagenome / Metatranscriptome	127	N
F069778	Metagenome / Metatranscriptome	123	N
F078233	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
NAP4_10013182	F078233	AGCAG	MKVNQEEKEFITLTKAARLLGYTSSQIINRLIDEKHLKAYSFPDSSTRKVCRHEVLSLVQLSVSKDSVDSE*
NAP4_10013183	F065486	GAG	MKDDLLDFRMLRDEDLLDRYVSLTKAASILGYASYVSVNALIQKKKITPYWLPGSCNKKILLSDLHKLLEEARSRPAPKKRGKGRPSII*
NAP4_10013186	F069778	N/A	MEKIYISCQEAKRLLGYKNHNSINYLVQKNKLNEYVVGPLKRKLYSLQEVRNLQGRLKGSSR*