Scaffold P52013CM_1003718

Overview

Basic Information

• Taxon OID: 3300003465
• Scaffold ID: P52013CM_1003718
• Source Dataset Name: Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Campinas
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19282
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (34.48%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location

• Location Name: Mina do Sossego, Brazil
• Coordinates
  • Lat. (^o): -6.426389
  • Long. (^o): -50.051389

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061699	Metagenome	131	N
F096530	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
P52013CM_100371813	F096530	N/A	MSDPAYGLVKFPPGTTTRSLGRNGTFITIGIYVDSYRQRITLTPQNSRGEAARCNIDLPNDSRVLLDLIQEILKNSPSIRKALKQEL*
P52013CM_10037186	F061699	N/A	VFNTAHEAVATLRGSWKEWKQAGVQFSRFHIPGTDFALPFDPNDYLWAGPVTLKLDLPEDGISYHRRGHYRRGVRKYLNQLKRGEKLPPIVLLYHEAWDWTVQDGNHRMEALVTHRADTYEAFLAKPKKKKPIDQF*