Scaffold DC09C_1160646

Overview

Basic Information

• Taxon OID: 3300003457
• Scaffold ID: DC09C_1160646
• Source Dataset Name: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S12-DC09C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 537
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Idiomarina → unclassified Idiomarina → Idiomarina sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Source Dataset Sampling Location

• Location Name: Douglas Channel, British Columbia, Canada
• Coordinates
  • Lat. (^o): 53.6667
  • Long. (^o): -129.1333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053264	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
DC09C_11606461	F053264	N/A	VGSPSVEKLQNGRYKLVVTCSTMNSREDWYSANKDRIFPDFGSLQSAEMSIDGLAPRTGEAYADMRLTQVESGNRSGMGQVGDYNVALTYETLGSSFVQVKDDNTDYELNGLRRVTRTSIAEAGTDYAKTVGSSYIDHQIDAETAVRCYLGSYGIDDTDSFRQVQEVYIEAGTLSETLD