Scaffold KH04A_1382986

Overview

Basic Information

• Taxon OID: 3300003455
• Scaffold ID: KH04A_1382986
• Source Dataset Name: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S16-KH04A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 518
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Source Dataset Sampling Location

• Location Name: Douglas Channel, British Columbia, Canada
• Coordinates
  • Lat. (^o): 53.6667
  • Long. (^o): -129.1333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105215	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
KH04A_13829862	F105215	AGGAG	MYIKTGPKNIEGSSRTLLFHQDPDIRLDAAIQLGGDTAGVSEQRLALEALTTALQDPCSTVQEAVLQSLMRMSGKNG*