Scaffold draft_100655

Overview

Basic Information

• Taxon OID: 3300003437
• Scaffold ID: draft_100655
• Source Dataset Name: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11401
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005069	Metagenome / Metatranscriptome	413	Y
F012682	Metagenome / Metatranscriptome	278	Y
F051453	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_10065514	F051453	N/A	TKSVIVNLRMPSEDASVPEYIILEDSTDFSVNYVLLDADAGSPNATGLMKFITETSSTSTGAAGIKSRLTVTPGPGDVTANDDFGYTQTFEYFNDNIDVNLTTGLDVNL*
draft_1006553	F012682	GAGG	MAAESQVLLDTEKKYIAKFFSDASESDVKKVDLSTLAWAKHTMTLSGAASPNFKIGEVLTVGSAETFLVTGFTAGASTVEVVGWDNTNKKATAIDTGSSNGDAISGGVSGANTRTLANSGNLTGLEWNVLVTKIMWITNGLQVAIEWDGSTAEKYIAELSGNGSWSMPGNEWPGIGINATGDSSEVLGDIQFSTTGHASGDSYTIIMELKKQAPGFDIPAYEENTSLGYKVDYLKGNFT*
draft_1006554	F005069	GAGG	MSNETTIGDIVAFSRSDDAAGVKTAIGDVLQQKVMVSLESKKKDFAKTFLTKPNTDSKEPESQEEVTDGS*