Scaffold draft_100628

Overview

Basic Information

• Taxon OID: 3300003437
• Scaffold ID: draft_100628
• Source Dataset Name: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11540
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F004643	Metagenome / Metatranscriptome	429	Y
F006146	Metagenome / Metatranscriptome	380	Y
F042386	Metagenome / Metatranscriptome	158	N
F055786	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_10062812	F006146	N/A	MIITTTTMIIVQVIVVGCIMWTTPEPCPRKYRVTQDKGGELAHASDIFRYCTLDYGGKFILKEE*
draft_10062814	F042386	N/A	MNNAGLTTRYEEGDNGQFELFKDNASYMKEDDRDGIPKFFTLEHIEKRLGGLGEY*
draft_10062819	F055786	GAG	MICSNCYTSHIKPKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKNRTWMDYKPVAIFGKKKKVEKKKTIEAITDKQFTDNL*
draft_10062820	F001048	N/A	MKIKSKKQFWWRLNHLKRNGGEITITDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNVCGYKDIPTLAKAYGIK*
draft_1006285	F004643	N/A	LVDLELARYYCKDFWEEEGWVSCFECDIIFYDLEKLYEHQLIHLREEVK*