Scaffold draft_100339

Overview

Basic Information

• Taxon OID: 3300003437
• Scaffold ID: draft_100339
• Source Dataset Name: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15381
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F006919	Metagenome	362	Y
F017718	Metagenome / Metatranscriptome	239	Y
F052651	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_10033912	F002715	AGGA	MPEHELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTTDKLQQLTVQIIQLNTRQEDYLRHSTSMTDEFKILHTRIGDLHDKQLAAQKDIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATTISVFLKD*
draft_10033914	F000245	AGG	MKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPNSDMMIHVYLRKMTPPSKKGMMAFNYQLEDK*
draft_10033915	F006919	GAG	MKSFIQHLKEFASYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHTTDLSGLEKLKRLEGGKKTISAFFSMMSRYMEGGIASGGGIVVEMDADVLVSASDDIMSQVDNKGRRWVEMSWFANAQRYGTGPKFAVVERELNDLIRDLVVKHLEPIIGNRARTEQEFYLWGDMKKQLKGDGRKIAAVIKDYFDGVEKVIKKNSEVMGNIFYGYAKSKRQTEQAWDEQIVNNIEITKVHIIDFTTKAPSLQGQFDASKDLAKKNSWPMKVWDATETMDLEVYTRQVAQAEVRTR*
draft_1003394	F052651	GGA	MDINKEYFNDKSEAEKLRNVSSLVDSIVNAEPVEELKVDSGVGEGDGTEKLEVPEIDPLVDLVGKAISKGKPKGFFMQGVQSDDHPKL*
draft_1003395	F017718	GGAG	MTTQNYDSSLDLVNDRLKQIDDIMEKFSGFPEVQQKLQGARDALVESEEEIMTYYDLTSIEKYNKT*