Scaffold draft_100234

Overview

Basic Information

• Taxon OID: 3300003437
• Scaffold ID: draft_100234
• Source Dataset Name: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18735
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (60.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005608	Metagenome / Metatranscriptome	395	Y
F010791	Metagenome / Metatranscriptome	299	N
F025300	Metagenome	202	Y
F028833	Metagenome / Metatranscriptome	190	Y
F041248	Metagenome / Metatranscriptome	160	Y
F105339	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
draft_10023410	F010791	GAG	MSFEFRAGRKRVVKSVETVEEANKLMRKMIKIRNENSLWENIDVKTGHLRAVDELEKVMGAIFDVYETMSIYVNGKSVRKIWKRGF*
draft_10023412	F105339	GAGG	MMKIDLTGTHEENMTAINNAEISEEFKAHIRKDLQEQVDRCLSSCFGVDLDIEHEKNSIPIHELVPKGMTIKEYFGND*
draft_10023424	F005608	GGAG	MKTTKIEILEEGEFIFGSPTVGKYMVRRYEDEVEMGGGFFKTKKEALTHAREYKKDK*
draft_10023425	F028833	N/A	MNNLTYLWSDGMVDSIAKKVAEEPMENVDDLPQHIIDEERGDAIRQWRKEQAQMEMFDDPYLNWSGLR*
draft_10023427	F041248	N/A	MSPQKRARQEGAIERTQASILVYKEKLKSCEDDTEKKLLKKKIERAKTTIENTKIRK*
draft_10023429	F025300	AGGA	MKKINVETLVPDTFKFLARDMDGKLYAFENEPSVAIDIACDNWDVKEGKFLQITNPVFLSAEGITHTGIDSVLGDWRDSLTEINNENVA*