Scaffold draft_100041

Overview

Basic Information

• Taxon OID: 3300003437
• Scaffold ID: draft_100041
• Source Dataset Name: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40519
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011406	Metagenome / Metatranscriptome	291	Y
F034216	Metagenome	175	Y
F075314	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_10004114	F075314	AGGAG	MAEENKWKEAELRRDDIKKLLENTKKLAGMYSEIMEVKRESWEAVLRAKIKKAEKEKQNG
draft_10004116	F011406	GGAG	MALIKATLFSELLQTFSAHSPDPMKPGKDIAKSFANYLKMGMNAGGFPTTNVIDAPTGMTIGQVFASQLPAGAAIGSQIASALTSMAATYLSTNQIGPPVVTPSHTPQLIQLFSAPQASGMSFAKELADVLDTWTKTWVVSGLIPGAPPIPFSGPLS*
draft_10004127	F034216	N/A	MSKESNLFGFLFCALLVIWAASSWGDPDLIDALIYYLSDGYYK*