Scaffold draft_100036

Overview

Basic Information

• Taxon OID: 3300003437
• Scaffold ID: draft_100036
• Source Dataset Name: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41800
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (90.38%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002310	Metagenome / Metatranscriptome	572	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_1000367	F002310	GGAG	MNELIVNADGTVTVVGDAGSVSGIIAEAVEAATIPAEYGEDGVETKAAIVPDADTLMVEISAEDLKTHAWRLPKARAERLEEIRGDRNGGLKELDLEYQLADEGVHPTGLDKAAVAAKKAALRDLPVAAQAALDAMDNTDDMEAYQPRELV*