Scaffold JGI25921J50272_10053874

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10053874
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 908
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F004840	Metagenome / Metatranscriptome	421	Y
F006744	Metagenome / Metatranscriptome	365	Y
F017995	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100538741	F000447	AGG	VNNNGIHRNFRMDNEGAGWVDLSEATPDELFNIELGLLEEGAFE*
JGI25921J50272_100538742	F006744	AGG	MNLDEFKKHVIRTREASKAEALSVLSATITKTNERENLNG*
JGI25921J50272_100538743	F017995	GGA	MAKVKEYIEIIAANCDECGGAGFLFWGTENNYDVEPCSCVDEISDELTLDWINN*
JGI25921J50272_100538744	F004840	GGA	MYKLTCAYDSNAPHWSAEYESEFGAWENFFLFTDWGMADEYSTVNLYTPTGKCYTKVFYRSGMVAVK*