Scaffold JGI25921J50272_10005855

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10005855
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3840
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F014017	Metagenome / Metatranscriptome	266	Y
F045752	Metagenome / Metatranscriptome	152	Y
F078716	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_1000585510	F045752	GAG	MADPNQTPTRGDWACPCSGCQKAVAWERKQLIELMLDHKHEYLVYRGSSFDLEGNLHWAKDDAMAYAEGIDAIIELIKDRMPKPKKKV*
JGI25921J50272_100058553	F014017	N/A	MEQLEKYLDERFRKQVADEIRYLELPPEWRPHEVIRYIVRIIENG*
JGI25921J50272_100058556	F001280	GGCGG	MCIECGCESLGSETGIANIPGGVQDVSRDGESGLTLDMTATPQQRESFINE*
JGI25921J50272_100058557	F078716	GAG	MSNGTGMETPPNSQPSGAVTSREATRKHPRQGGAGFKIDTNKHGIRRETSLDPKPPKKYGRKKV*