Scaffold JGI25921J50272_10005554

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10005554
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3947
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002598	Metagenome / Metatranscriptome	544	Y
F004051	Metagenome / Metatranscriptome	455	Y
F006744	Metagenome / Metatranscriptome	365	Y
F017995	Metagenome / Metatranscriptome	237	Y
F021481	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100055541	F002598	N/A	LPMATKLYTIESLLVGKNYRSNSRHFSGEIVSAEARPEIYYGEKTEAYLIEINAGGLRNKFATIAVKVGE*
JGI25921J50272_1000555410	F004051	AGGA	MTVGNKTYQVGDLFTTLKSKETGVISEIIQNASGSVRVRLTTDNGERWTTVSADSMA*
JGI25921J50272_1000555412	F021481	AGGA	MSPILDTAKGRFYRKGDVFTTGKSGITGTIAEIVAVRPNLTKLGLNTENGLRWAMVKIGA
JGI25921J50272_100055543	F006744	AGGAG	MNLDEFKKHVIAQREASKAEALSVLSATIAKSTNEGENLNG*
JGI25921J50272_100055544	F017995	GGA	MAKMKEYVEIIAANCDECGGAGFLFWGTENNYDVEPCSCVDEISDELTLDWVNN*