Scaffold JGI25921J50272_10001498

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10001498
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7853
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010085	Metagenome / Metatranscriptome	308	Y
F050376	Metagenome / Metatranscriptome	145	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100014981	F050376	AGG	MTLEEYKAHVEAQRKESLQKAIATLSEANAKMSQLFGTKEAN*
JGI25921J50272_100014982	F085708	AGAAG	MNRLLTTLVQLAIAIPALYMGRMMWQELKQDVREVIKDFR*
JGI25921J50272_1000149820	F010085	AGGAGG	VKIQYVSKYLTLAEEGLVPNLVCPMDQGLLFCNQDLDENIFLYCLSCEYKNNIGTVLYAKIVDQVEKVKND*