Scaffold JGI25914J50564_10013653

Overview

Basic Information

• Taxon OID: 3300003429
• Scaffold ID: JGI25914J50564_10013653
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2534
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021112	Metagenome	220	Y
F047674	Metagenome / Metatranscriptome	149	Y
F070118	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25914J50564_100136532	F070118	AGGA	MSELDFKPISCKKCGNLIWAGVSATSRCDIKLDTNRLNLTDEIVALTAGIATYELHRTAVSFEATRRMATRMSVASPIVVATHTCRPLTVFAEQPPDYFNRPKLSTTSEKVPF*
JGI25914J50564_100136533	F021112	AGG	VWLTNIPDLQYQAGFHIAPGRSGSGAASAERSIGVNVNALDYSMAIELLGILHSWESEIRAARRLTPPALLKKEPTTDMEVQVACQFQLAHLEWTLGQEWASDFYNEIKEQHAKGMAAAKQFVEQPRSIPCPTDDCHKFVVIDAENLMSDVSCFGCKQSWTVLRLVALAMSNPSRKFFLDVEAIALWLGITQRQVYKIVKANNIDRRGSLYDLAGVIANR*
JGI25914J50564_100136534	F047674	GGA	MDTETIEEIDEALLHAITTRANAIDSKKHIVDKFIDDLLDSRLELTKC*