Scaffold JGI25922J50271_10005617

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10005617
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3518
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F040629	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100056172	F000671	GAGG	MSEKIFCYSCNKTKNKLNLRKSSLLTINLFLCQTCIDNKFEPRWVVLIAGRQNGHEHVKDFIQKKRYIGTEIAASELLV*
JGI25922J50271_100056174	F000473	N/A	MSNVYDNNHFKYGMNQWTGEPNKPVFYNLEMKKKLWELKRPMFLLMDVVEYPEFLALRLYEDNFIQFDGIEKEKVIDYVSRAKKLLESYGVRVELEGRPMA*
JGI25922J50271_100056178	F040629	N/A	MNKYLIKLEISAEVEAFDENDAKEYISDVFGTDDEVKSVKISSIKIKGDKK*