Scaffold JGI25922J50271

Basic Information
Taxon OID	3300003413 Open in IMG/M
Scaffold ID	JGI25922J50271_10000794 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003413 Open in IMG/M

Scaffold ID

JGI25922J50271_10000794 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9303
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (77.27%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9303

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (77.27%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014140	Metagenome / Metatranscriptome	265	Y
F016396	Metagenome / Metatranscriptome	247	Y
F073544	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000079410	F000671	GAGG	MEKILCYCCNKTKNKLNLKKSVLIPINLFMCETCISSKFEPRWVIILAGRQLGSDSVKEFIIKKRYCGAEIAASELLV*
JGI25922J50271_1000079411	F073544	AGG	VREYYEVINIVFIHELRLWGTCESLGLYASKIKYQKDGIEYEDMFDNEEFTVMEEIVLEHAEEDN*
JGI25922J50271_1000079412	F000473	AGG	MEFLNKDKDHFKHGVNLWNGEPNKPVFYTKEMSLKIRDLKKPVPDLMLDVVQYPEFLAVRLYEDNFVQYEGSKKEQVIDYVGKVKKLIESYGVRCELEGVPSARILRSN*
JGI25922J50271_1000079414	F012975	GAGG	MERSKHNKQDSYWENYDLLIWKKDPGGFTNVKGMFRKDSWGIAERIPVNENGIWKLPKHYVKYFK*
JGI25922J50271_1000079417	F014140	N/A	MNTYTVKLNVELEVQAFNETDAKDYVSDIFNIDDEIKGVNIVKIIQK*
JGI25922J50271_100007946	F016396	GGA	VRKSERLRLLEMQVVRLEMMVELYTQTLSNLLESQGLSTPSQLDAGKWYKAKLDKLDNE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25922J50271_10000794

Overview

Ecosystem & Geography

Associated Families

Sequences