Scaffold JGI25922J50271_10000566

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10000566
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10826
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004840	Metagenome / Metatranscriptome	421	Y
F006744	Metagenome / Metatranscriptome	365	Y
F009530	Metagenome / Metatranscriptome	316	Y
F017995	Metagenome / Metatranscriptome	237	Y
F019325	Metagenome / Metatranscriptome	230	Y
F074872	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000056610	F004840	N/A	MYKLTCAYDSNAPHWSAEYENEYGAWENFFLFTDWGMANEYSTVNLYTPSGKCYTKVFYRSGMVAVK*
JGI25922J50271_1000056611	F017995	GGA	MAKVKELIEIVSAECDECGGAGFIFFGNELAYDVEPCDCIANVEDELTVDWVNE*
JGI25922J50271_1000056612	F006744	AGG	MNLEEFKAHVIAQREATKAEALSVLSATISTTKERENLNG*
JGI25922J50271_1000056614	F019325	AGGTGG	MTTLNETLFSTIVHEYHNGGVKSSYGLDAYTRKELLKYLFSSKSCNCINCL*
JGI25922J50271_1000056618	F009530	AGG	MTITYSIWQGSRLLSIDNVAHEMKAIDHLIDSLNASNLGKKVKFSANVQSIKTGDNK*
JGI25922J50271_100005662	F074872	N/A	MLKYYPNKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKGNSLDNS*