Scaffold JGI25922J50271_10000126

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10000126
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21559
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (86.84%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F003379	Metagenome / Metatranscriptome	490	Y
F003690	Metagenome / Metatranscriptome	473	Y
F009143	Metagenome / Metatranscriptome	322	Y
F009530	Metagenome / Metatranscriptome	316	Y
F010085	Metagenome / Metatranscriptome	308	Y
F066779	Metagenome / Metatranscriptome	126	Y
F080026	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000012624	F010085	AGTAGG	MQIQYVSKYIALSEEGLVPRLECPMDQGSLLCNQDLEDNIYLYCLSCEYKNNIGLEVYRRIVNEVNNV*
JGI25922J50271_1000012627	F080026	GAGG	MKLMAYSQEQMDFAHKVVVRLMEILKVCPNVDDKYRCHTPTQKPHQRCVDLMVLLAEITNLPEYLVYLGNNEETKVDPYGWILAYPPAEAIVQGELNNDTKVVDLE*
JGI25922J50271_1000012628	F003379	GGA	MKKIWALIMLTATAVFSGLAMSKFLNWAGNQDIFDFDLNEDIDNEQF*
JGI25922J50271_1000012633	F066779	AGGA	MFSLSYKVQYSDTEFSTCLGVLMNTEQDANEYLDLLALRGTILETNLRELENYKPSTRKVYATTRSWE*
JGI25922J50271_1000012635	F009530	AGAAG	MTITYSIWQGSRLLSIDNVAHEIKAIDHLIATLNASELGKKTKFSANVMTIKTGDNK*
JGI25922J50271_1000012636	F009143	AGGAG	MMTKWDTIQADVSDAYVYLDEEEMYNKALEEGAIDLLDVDDFDEDELSKSLTLDWND*
JGI25922J50271_1000012637	F003690	GGA	MITDGLELYITTDYGIELDSFLGAIYLPWHTIAIATALLIAYKIYKRKKNK*
JGI25922J50271_1000012638	F001562	N/A	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELENE*