Scaffold JGI25922J50271_10000004

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10000004
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81537
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (85.44%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F002501	Metagenome / Metatranscriptome	553	Y
F008245	Metagenome / Metatranscriptome	336	N
F035307	Metagenome	172	Y
F059959	Metagenome	133	N
F080044	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_10000004103	F059959	AGGAGG	MEKIKQQVSDLAHNLVTIVMITLFLFPVQPANALVVKPLVKTEAQLKQEVLDSFSKEIYKPSEMLT
JGI25922J50271_1000000412	F000376	AGGA	MSTYQEKAKECKCCGKHVPLPTVLKEYNGIVLCPTTFSNVVEYKRIWIASGKRPMGNIRKHFSEYVQQIVEETIDKNQDGTL*
JGI25922J50271_1000000414	F000369	AGG	MSEIEPAQHFDRMNRVVEELLKGNTPTQIATITGFQRKEVLEFIDEWKTVVHSDSGIRDRAREAISGADQHYAMLIKEAWKTVEDADQAGQLAVKSGALKLIADIETKRIAMLQSVGVLENNEIASQIVETERKQEVLVKILKEVSSTCPKCKMDVAKRLSQITGIIESVPVEEADVV*
JGI25922J50271_1000000424	F008245	AGG	MAEEKNTLELISNITEFNDLHEFMKDEHLDKALAIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS*
JGI25922J50271_1000000427	F080044	AGAAG	MPNLNEFFNKKIEQKEYELERLPGLRACNTCDEDVNGASWDPIELVMSWRCSKGHETVFKVQ*
JGI25922J50271_1000000439	F002501	AGG	MWCSKCGGRVFVDRVFSQKLHIELFCIMCGKRNMVNKEMSAFGKWLDAKETATLKNYGISS*
JGI25922J50271_1000000452	F000258	GGAGG	MTDYNYDVMLDLRKHLWSQLKSNSLFQASDYYSDNLGEELIPIIPVQQQPEMNQFLSGKKHIVYDKVGMSYEDNWVICCEQILFTIYSTDISEINQIRNLMTDLYRRMDESARDTNLYSGISQKFKFYSIFVADISPTAPSEELAGFLSADVILEVKYARHVDSNGRFL*
JGI25922J50271_1000000453	F035307	GGAG	LDTSAVLVQAASGLHKSMSGAKGTVLKDSTVAQISAAIYYQASVVSKVTTNKQFQSKFQTILFNQIEKDFGNYVDSQARINPKTLHHVYEWKKVGVPSSRLFNLKMSGVSGLSFKIVSEFKPSKSMVPTNFGKSRHVFTNKASVMEAGNPVVIRPRSAERLVFEIDGFVVRMPKGMPVTVKRPGGGKATGRFKIAYAQFFTGNLVNLSIKNSRFQQIFNSSMTKALKLPGDIRKVKYSFSPNTVNMQAETALVAAFGGAV*