Scaffold JGI25920J50251_10001404

Overview

Basic Information

• Taxon OID: 3300003404
• Scaffold ID: JGI25920J50251_10001404
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8634
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002214	Metagenome	582	Y
F003067	Metagenome / Metatranscriptome	509	Y
F030434	Metagenome	185	N
F085231	Metagenome	111	Y
F090388	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25920J50251_100014041	F090388	N/A	MALLRIKCRVCAKVGAGMQNHAIVAEFTNLPPNKICVQCMSCGVMGIEDLLDSQAPTAEEILHD*
JGI25920J50251_100014042	F030434	GAGG	MHANLALVPTPLPAVVLDYSQEVQAHASGFARSTGIVANRPDHAGRYNNKLNYHEFVTENSEAAGSEIAVAQYMGIKNFVPTVDTFTDSPDISIGNLNLEVKWTRYLSGHLIIHANYTRLTDVAILVVGKSPVYALAGWMPVLWAKKPKYLNSVDGNYWVSQRELFEMSTLRKSVYGITED*
JGI25920J50251_100014045	F003067	N/A	MTTAQSLLTIGIAVATLLGFAAGLVRHLVKYYLSELRVDGNGGHNLVGRVERIEKRVDSIYELLLEH*
JGI25920J50251_100014046	F002214	AGGAG	MGPVQFNVHNETKYDLKVQSSNGATAEAVAGASTTLDFTPDDTNITNAMRWYADGICILQGSVAWSAGGSGADDGWTTSNIICMSGEMNGVPFSGCNEGWVELQPYNLMANGGEVTVTYTNA*
JGI25920J50251_100014047	F085231	AGGAG	MKEQLQAAGLSYLRHAATCAAALYMSGVTDPKTLANAFLAGLIGPLLRALNPSDKSFGVK