Scaffold JGI25909J50240_1020712

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1020712
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1513
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007164	Metagenome / Metatranscriptome	356	Y
F014488	Metagenome	262	Y
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10207121	F100669	AGGGGG	MTKGICDLRKILHKAQVRLTQAGSLIIGYLRKIGSLVRGVNDLGNFYFAKTTQNRFR
JGI25909J50240_10207122	F007164	AGGA	MSEKQIGMELQRTVKALEKAKETAIEQMGQAIGLAADAGDILLSARTEGLDLNAIQDIAQINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSITQWTPAQRTQFVEEARPIVEAFKEAGGEL*
JGI25909J50240_10207124	F014488	N/A	MAEHIDTLQDRVKERLAKMQAMNPSIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDESLLALATNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNSEAWAKGIKPRGKKR*