Scaffold JGI25909J50240_1014950

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1014950
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1844
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F022157	Metagenome	215	Y
F052471	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10149501	F052471	AGG	MIRKIRTFYGKRNGQRGNKVTTIDQGEAWLCEKCGEVIFFEHLVPKHFCKTEIKPVVHSDTESSLPP*
JGI25909J50240_10149503	F002420	GGA	VTFRESTIKYVKDILRARTIHEVIAKELQEAHLRKLEAETAAEYAYAAIQYNEERISRLENRLSKHTKEGDYT*
JGI25909J50240_10149505	F022157	GGAG	MWDVLVTVTLMAFGAFVVIAFGVILIWTLYLLQNEADND*