Scaffold JGI25909J50240_1003821

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1003821
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3856
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006505	Metagenome / Metatranscriptome	371	Y
F013408	Metagenome / Metatranscriptome	271	Y
F025747	Metagenome / Metatranscriptome	200	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10038211	F013408	N/A	VEFLYRKEYDLTEKEHIVVDFTPYKTKAGKIMSHIVLSDKDKNLTRAIVFPSMYKISLAKMREGMKCQVILSTLDDGTLMIKEIK*
JGI25909J50240_100382111	F006505	GGA	MKLADLVKTKANRVLGIDASTNSIAFCLMQNNVPLKWGKVDL
JGI25909J50240_10038214	F025747	AGGAGG	VPNLDEFFKKEKVMASELERFGGKKPCAKCDKDAEEYFWEVATLTMTWTCPDGHENTYRLN*
JGI25909J50240_10038216	F071247	GGAGG	MGSNNKIPFNQTVIKNGRXVRVRKDGSVKADLGPYKTEQTKAKQ*