Scaffold JGI25909J50240_1000474

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1000474
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10289
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016388	Metagenome / Metatranscriptome	247	N
F065780	Metagenome / Metatranscriptome	127	Y
F102851	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_100047418	F016388	N/A	MNSMIAKTLDLSQRLVSLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLATASVDGELTSDEITAAFGTKTKKK*
JGI25909J50240_100047419	F065780	AGG	MKRIVTYIMENTWTWVGTGMVLITLSGPTLRQALLLTGVGILIHSLISLTQKDTX*
JGI25909J50240_100047420	F102851	N/A	IDVFGSQFEDYVPTGSNIPVRTRRTLVAAGALLVGMSSSSIRRK*